R: Associate values to tips in phylogeny -


i have phylogeny , data (traits values). i've reconstructed trait values nodes using ace in caper.

i used makenodelabel in ape associate reconstructed trait values appropriate nodes.

what want export nexus file (phylogeny) r contains both node values (recontructed values) and tip labels (emperical data).

i want use color codes (in figtree) indicate values, right i'm able nodes, i.e. tip-branches not have data , hence not "color codable".

i need associate values tips in order this, haven't been able figure out how this. need data associate phylogeny in "similar category", i.e. example how theta values *beast coded in nexus files.

any , appreciated.

i've found workaround:

export tree (nexus format) r reconstructed traits associated nodes. open in figtree , define "label" trait "trait". import tip annotations text file contain empirical data in column header "trait". export tree figtree new file nexus-block , include annotations. lasty, copy names name block in nexus file (animal/organism[&trait=2.35754]) , exchange names ones in coded tree. have trait values coded through [&trait=value] both nodes , tips. can color code entire tree includes empirical values associated tips of phylogeny.

sooo, that's stupid way of doing it. if has better way, i'd love hear it.


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